Hi akryuchkov,
Welcome to Microsoft Community.
I'm sorry to hear you're experiencing this issue with your Surface Book 3. You've already done a thorough job of troubleshooting, but let's try a couple more things:
Check Power Settings: Sometimes, power settings can throttle USB ports, especially in devices like external SSDs. Go to Device Manager > Universal Serial Bus Controllers > right-click on each USB Root Hub > Properties > Power Management tab, and make sure "Allow the computer to turn off this device to save power" is unchecked for each one. Then, restart your Surface. You might want to check if the issue is hardware-related. Even though you’ve reset and reinstalled everything, there could be an underlying hardware failure with the USB controller or ports themselves. You might want to reach out to Microsoft support to check if there’s an underlying hardware issue. Contact Us - Microsoft Support
Your SincerelyHahn. W - MSFT | Microsoft Community Support Specialist